Loading the library

library(Seurat)

Setting the working directory

setwd("C:/Users/savill/OneDrive/Documents/PhD Jesse/R-Objects")

Loading the data

# load my data
Gastruloid_48h_merged_afterQC <- readRDS("./df48v3.rds")

DefaultAssay(Gastruloid_48h_merged_afterQC) <- "RNA"

Gastruloid_48h_merged_afterQC <- SetIdent(Gastruloid_48h_merged_afterQC, value = "predicted.id")

Getting the metadata and taking a peak:

metadata <- Gastruloid_48h_merged_afterQC@meta.data
head(metadata)

Get all the columns so we can delete the old morphology info:

colnames(metadata)
 [1] "orig.ident"       "nCount_RNA"       "nFeature_RNA"     "Sample.barcode"   "Morphotype"       "percent.mt"       "RNA_snn_res.0.4" 
 [8] "seurat_clusters"  "S.Score"          "G2M.Score"        "Phase"            "old.ident"        "RNA_snn_res.0.2"  "Area"            
[15] "AR"               "percent.ribo"     "RNA_snn_res.0.3"  "RNA_snn_res.0.1"  "RNA_snn_res.0.25" "RNA_snn_res.0.35" "RNA_snn_res.0.5" 
[22] "RNA_snn_res.0.6"  "hippopath1"       "hippopath2"       "hippopath3"       "hippopath4"       "hippopath5"       "hippopath6"      
[29] "hippopath7"       "hippopath8"       "hippopath9"       "hippopath10"      "hippopath11"      "hippopath12"      "hippopath13"     
[36] "hippopath14"      "hippopath15"      "hippopath16"      "hippopath17"      "hippopath18"      "hippopath19"      "hippo1"          
[43] "hippo2"           "hippo3"           "hippo4"           "hippo5"           "hippo6"           "hippo7"           "hippo8"          
[50] "hippo9"           "hippo10"          "hippo11"          "hippo12"          "hippo13"          "hippo14"          "hippo15"         
[57] "hippo16"          "hippo17"          "hippo18"          "hippo19"          "Cluster1"         "Cluster21"        "Cluster22"       
[64] "Cluster23"        "Cluster24"        "Cluster25"        "Cluster26"        "Cluster27"        "Cluster28"        "Cluster29"       
[71] "Cluster210"       "Cluster211"       "Cluster212"       "Cluster213"       "Cluster214"       "Cluster215"       "Cluster216"      
[78] "Cluster217"       "Cluster218"       "Cluster219"       "Cluster2"         "Cluster3"         "Cluster4"         "Cluster5"        
[85] "Cluster6"         "Cluster7"         "Cluster8"         "Cluster9"         "Cluster10"        "Cluster11"        "Cluster12"       
[92] "Cluster13"        "Cluster14"        "Cluster15"        "Cluster16"        "Cluster17"        "Cluster18"        "Cluster19"       
all_features = colnames(metadata)
old_morpho_features = c("Area","AR")
metadata_old_removed = metadata[!(all_features %in% old_morpho_features)]
#index_name = "row_names"
#metadata_old_removed[, index_name] <- rownames(metadata_old_removed)

metadata_old_removed
NA

Now we can move on to loading the new features and adding them to the metadata:

my_data_48h = read.csv("Morphodata_All_Features_Sequenced_048h.csv")
dim(my_data_48h)
[1]  72 537
my_data_48h

Adding the identifier so we can merge the dataframes:

# if this is how we add the barcode identifyer it is CRITICAL that the order is the same as in the spreadsheet
# This means A1-A12 INSTEAD of A10,A11,A12,A1,A2 (which is the default order in python and pandas)
barcoder_identifier = "bar"
my_data_48h[barcoder_identifier] <- paste("Bar", c(1:72), sep="")
my_data_48h

Add info to metadata

Here I am basically excluding the columns we don’t want to add, assuming that we want to add all columns that are in the .csv file. Alternatively we could specify which columns (or which features) we want to add to the seurat object manually. No matter which way it is done we would have to add the sample barcode to be able to merge the data with the existing metadata.

all_columns = colnames(my_data_48h)
columns_we_dont_need = c('Sample','Multi_BC','Multi_BC_.','Morphotype',barcoder_identifier)
columns_we_need = all_columns[!(all_columns %in% columns_we_dont_need)]


for (feature_name in columns_we_need) {
  metadata_old_removed[feature_name]<- my_data_48h[[feature_name]][match(metadata_old_removed$Sample.barcode, my_data_48h[[barcoder_identifier]])]
} 
metadata_old_removed

actually adding the metadata to the Seurat object. One thing to do beforehand is removing the old morpho data from the seurat object


for (x in old_morpho_features) {
  Gastruloid_48h_merged_afterQC@meta.data[[x]]=NULL
} 

head(Gastruloid_48h_merged_afterQC@meta.data)

Now we can add the new metadata

for (feature_name in columns_we_need){
  Gastruloid_48h_merged_afterQC <- AddMetaData(object = Gastruloid_48h_merged_afterQC, metadata = metadata_old_removed[[feature_name]], col.name = feature_name)
}

# Now we can look at the final dataframe:
Gastruloid_48h_merged_afterQC@meta.data

checking the column_names

colnames(Gastruloid_48h_merged_afterQC@meta.data)
  [1] "orig.ident"                                              "nCount_RNA"                                             
  [3] "nFeature_RNA"                                            "Sample.barcode"                                         
  [5] "Morphotype"                                              "percent.mt"                                             
  [7] "RNA_snn_res.0.4"                                         "seurat_clusters"                                        
  [9] "S.Score"                                                 "G2M.Score"                                              
 [11] "Phase"                                                   "old.ident"                                              
 [13] "RNA_snn_res.0.2"                                         "percent.ribo"                                           
 [15] "RNA_snn_res.0.3"                                         "RNA_snn_res.0.1"                                        
 [17] "RNA_snn_res.0.25"                                        "RNA_snn_res.0.35"                                       
 [19] "RNA_snn_res.0.5"                                         "RNA_snn_res.0.6"                                        
 [21] "hippopath1"                                              "hippopath2"                                             
 [23] "hippopath3"                                              "hippopath4"                                             
 [25] "hippopath5"                                              "hippopath6"                                             
 [27] "hippopath7"                                              "hippopath8"                                             
 [29] "hippopath9"                                              "hippopath10"                                            
 [31] "hippopath11"                                             "hippopath12"                                            
 [33] "hippopath13"                                             "hippopath14"                                            
 [35] "hippopath15"                                             "hippopath16"                                            
 [37] "hippopath17"                                             "hippopath18"                                            
 [39] "hippopath19"                                             "hippo1"                                                 
 [41] "hippo2"                                                  "hippo3"                                                 
 [43] "hippo4"                                                  "hippo5"                                                 
 [45] "hippo6"                                                  "hippo7"                                                 
 [47] "hippo8"                                                  "hippo9"                                                 
 [49] "hippo10"                                                 "hippo11"                                                
 [51] "hippo12"                                                 "hippo13"                                                
 [53] "hippo14"                                                 "hippo15"                                                
 [55] "hippo16"                                                 "hippo17"                                                
 [57] "hippo18"                                                 "hippo19"                                                
 [59] "Cluster1"                                                "Cluster21"                                              
 [61] "Cluster22"                                               "Cluster23"                                              
 [63] "Cluster24"                                               "Cluster25"                                              
 [65] "Cluster26"                                               "Cluster27"                                              
 [67] "Cluster28"                                               "Cluster29"                                              
 [69] "Cluster210"                                              "Cluster211"                                             
 [71] "Cluster212"                                              "Cluster213"                                             
 [73] "Cluster214"                                              "Cluster215"                                             
 [75] "Cluster216"                                              "Cluster217"                                             
 [77] "Cluster218"                                              "Cluster219"                                             
 [79] "Cluster2"                                                "Cluster3"                                               
 [81] "Cluster4"                                                "Cluster5"                                               
 [83] "Cluster6"                                                "Cluster7"                                               
 [85] "Cluster8"                                                "Cluster9"                                               
 [87] "Cluster10"                                               "Cluster11"                                              
 [89] "Cluster12"                                               "Cluster13"                                              
 [91] "Cluster14"                                               "Cluster15"                                              
 [93] "Cluster16"                                               "Cluster17"                                              
 [95] "Cluster18"                                               "Cluster19"                                              
 [97] "Plate"                                                   "X048h_raw_BF_AreaShape_area"                            
 [99] "X048h_raw_BF_AreaShape_aspect_ratio"                     "X048h_raw_BF_AreaShape_axis_major_length"               
[101] "X048h_raw_BF_AreaShape_axis_minor_length"                "X048h_raw_BF_AreaShape_eccentricity"                    
[103] "X048h_raw_BF_AreaShape_feret_diameter_max"               "X048h_raw_BF_AreaShape_perimeter"                       
[105] "X048h_raw_BF_AreaShape_solidity"                         "X048h_str_BF_AreaShape_area"                            
[107] "X048h_str_BF_AreaShape_aspect_ratio"                     "X048h_str_BF_AreaShape_eccentricity"                    
[109] "X048h_str_BF_AreaShape_equivalent_diameter"              "X048h_str_BF_AreaShape_extent"                          
[111] "X048h_str_BF_AreaShape_form_factor"                      "X048h_str_BF_AreaShape_inertia_tensor_0_0"              
[113] "X048h_str_BF_AreaShape_inertia_tensor_0_1"               "X048h_str_BF_AreaShape_inertia_tensor_1_0"              
[115] "X048h_str_BF_AreaShape_inertia_tensor_1_1"               "X048h_str_BF_AreaShape_inertia_tensor_eigvals_0"        
[117] "X048h_str_BF_AreaShape_inertia_tensor_eigvals_1"         "X048h_str_BF_AreaShape_locoefa_PC_1"                    
[119] "X048h_str_BF_AreaShape_locoefa_PC_2"                     "X048h_str_BF_AreaShape_locoefa_PC_3"                    
[121] "X048h_str_BF_AreaShape_locoefa_PC_4"                     "X048h_str_BF_AreaShape_locoefa_PC_5"                    
[123] "X048h_str_BF_AreaShape_locoefa_UMAP_1"                   "X048h_str_BF_AreaShape_locoefa_UMAP_2"                  
[125] "X048h_str_BF_AreaShape_locoefa_UMAP_3"                   "X048h_str_BF_AreaShape_locoefa_coeff_0"                 
[127] "X048h_str_BF_AreaShape_locoefa_coeff_1"                  "X048h_str_BF_AreaShape_locoefa_coeff_10"                
[129] "X048h_str_BF_AreaShape_locoefa_coeff_11"                 "X048h_str_BF_AreaShape_locoefa_coeff_12"                
[131] "X048h_str_BF_AreaShape_locoefa_coeff_13"                 "X048h_str_BF_AreaShape_locoefa_coeff_14"                
[133] "X048h_str_BF_AreaShape_locoefa_coeff_15"                 "X048h_str_BF_AreaShape_locoefa_coeff_16"                
[135] "X048h_str_BF_AreaShape_locoefa_coeff_17"                 "X048h_str_BF_AreaShape_locoefa_coeff_18"                
[137] "X048h_str_BF_AreaShape_locoefa_coeff_19"                 "X048h_str_BF_AreaShape_locoefa_coeff_2"                 
[139] "X048h_str_BF_AreaShape_locoefa_coeff_20"                 "X048h_str_BF_AreaShape_locoefa_coeff_21"                
[141] "X048h_str_BF_AreaShape_locoefa_coeff_22"                 "X048h_str_BF_AreaShape_locoefa_coeff_23"                
[143] "X048h_str_BF_AreaShape_locoefa_coeff_24"                 "X048h_str_BF_AreaShape_locoefa_coeff_25"                
[145] "X048h_str_BF_AreaShape_locoefa_coeff_26"                 "X048h_str_BF_AreaShape_locoefa_coeff_27"                
[147] "X048h_str_BF_AreaShape_locoefa_coeff_28"                 "X048h_str_BF_AreaShape_locoefa_coeff_29"                
[149] "X048h_str_BF_AreaShape_locoefa_coeff_3"                  "X048h_str_BF_AreaShape_locoefa_coeff_30"                
[151] "X048h_str_BF_AreaShape_locoefa_coeff_31"                 "X048h_str_BF_AreaShape_locoefa_coeff_32"                
[153] "X048h_str_BF_AreaShape_locoefa_coeff_33"                 "X048h_str_BF_AreaShape_locoefa_coeff_34"                
[155] "X048h_str_BF_AreaShape_locoefa_coeff_35"                 "X048h_str_BF_AreaShape_locoefa_coeff_36"                
[157] "X048h_str_BF_AreaShape_locoefa_coeff_37"                 "X048h_str_BF_AreaShape_locoefa_coeff_38"                
[159] "X048h_str_BF_AreaShape_locoefa_coeff_39"                 "X048h_str_BF_AreaShape_locoefa_coeff_4"                 
[161] "X048h_str_BF_AreaShape_locoefa_coeff_40"                 "X048h_str_BF_AreaShape_locoefa_coeff_41"                
[163] "X048h_str_BF_AreaShape_locoefa_coeff_42"                 "X048h_str_BF_AreaShape_locoefa_coeff_43"                
[165] "X048h_str_BF_AreaShape_locoefa_coeff_44"                 "X048h_str_BF_AreaShape_locoefa_coeff_45"                
[167] "X048h_str_BF_AreaShape_locoefa_coeff_46"                 "X048h_str_BF_AreaShape_locoefa_coeff_47"                
[169] "X048h_str_BF_AreaShape_locoefa_coeff_48"                 "X048h_str_BF_AreaShape_locoefa_coeff_49"                
[171] "X048h_str_BF_AreaShape_locoefa_coeff_5"                  "X048h_str_BF_AreaShape_locoefa_coeff_50"                
[173] "X048h_str_BF_AreaShape_locoefa_coeff_51"                 "X048h_str_BF_AreaShape_locoefa_coeff_6"                 
[175] "X048h_str_BF_AreaShape_locoefa_coeff_7"                  "X048h_str_BF_AreaShape_locoefa_coeff_8"                 
[177] "X048h_str_BF_AreaShape_locoefa_coeff_9"                  "X048h_str_BF_AreaShape_major_axis_length"               
[179] "X048h_str_BF_AreaShape_minor_axis_length"                "X048h_str_BF_AreaShape_moments_hu_0"                    
[181] "X048h_str_BF_AreaShape_moments_hu_1"                     "X048h_str_BF_AreaShape_moments_hu_2"                    
[183] "X048h_str_BF_AreaShape_moments_hu_3"                     "X048h_str_BF_AreaShape_moments_hu_4"                    
[185] "X048h_str_BF_AreaShape_moments_hu_5"                     "X048h_str_BF_AreaShape_moments_hu_6"                    
[187] "X048h_str_BF_AreaShape_orientation"                      "X048h_str_BF_AreaShape_perimeter"                       
[189] "X072h_raw_BF_AreaShape_area"                             "X072h_raw_BF_AreaShape_aspect_ratio"                    
[191] "X072h_raw_BF_AreaShape_axis_major_length"                "X072h_raw_BF_AreaShape_axis_minor_length"               
[193] "X072h_raw_BF_AreaShape_eccentricity"                     "X072h_raw_BF_AreaShape_feret_diameter_max"              
[195] "X072h_raw_BF_AreaShape_perimeter"                        "X072h_raw_BF_AreaShape_solidity"                        
[197] "X072h_raw_CH__bf_mask_Intensity_IntegratedIntensity"     "X072h_raw_CH__bf_mask_Intensity_IntegratedIntensityEdge"
[199] "X072h_raw_CH__bf_mask_Intensity_LowerQuartileIntensity"  "X072h_raw_CH__bf_mask_Intensity_MADIntensity"           
[201] "X072h_raw_CH__bf_mask_Intensity_MassDisplacement"        "X072h_raw_CH__bf_mask_Intensity_MaxIntensity"           
[203] "X072h_raw_CH__bf_mask_Intensity_MaxIntensityEdge"        "X072h_raw_CH__bf_mask_Intensity_MeanIntensity"          
[205] "X072h_raw_CH__bf_mask_Intensity_MeanIntensityEdge"       "X072h_raw_CH__bf_mask_Intensity_MedianIntensity"        
[207] "X072h_raw_CH__bf_mask_Intensity_MinIntensity"            "X072h_raw_CH__bf_mask_Intensity_MinIntensityEdge"       
[209] "X072h_raw_CH__bf_mask_Intensity_StdIntensity"            "X072h_raw_CH__bf_mask_Intensity_StdIntensityEdge"       
[211] "X072h_raw_CH__bf_mask_Intensity_UpperQuartileIntensity"  "X072h_raw_CH__bf_mask_Location_CenterMassIntensity_X"   
[213] "X072h_raw_CH__bf_mask_Location_CenterMassIntensity_Y"    "X072h_raw_CH__bf_mask_Location_CenterMassIntensity_Z"   
[215] "X072h_raw_CH__bf_mask_Location_Center_X"                 "X072h_raw_CH__bf_mask_Location_Center_Y"                
[217] "X072h_raw_CH__bf_mask_Location_Center_Z"                 "X072h_raw_CH__bf_mask_Location_MaxIntensity_X"          
[219] "X072h_raw_CH__bf_mask_Location_MaxIntensity_Y"           "X072h_raw_CH__bf_mask_Location_MaxIntensity_Z"          
[221] "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_1of9"   "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_2of9"  
[223] "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_3of9"   "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_4of9"  
[225] "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_5of9"   "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_6of9"  
[227] "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_7of9"   "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_8of9"  
[229] "X072h_raw_CH__bf_mask_RadialDistribution_FracAtD_9of9"   "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_1of9" 
[231] "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_2of9"  "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_3of9" 
[233] "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_4of9"  "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_5of9" 
[235] "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_6of9"  "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_7of9" 
[237] "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_8of9"  "X072h_raw_CH__bf_mask_RadialDistribution_MeanFrac_9of9" 
[239] "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_1of9"  "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_2of9" 
[241] "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_3of9"  "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_4of9" 
[243] "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_5of9"  "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_6of9" 
[245] "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_7of9"  "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_8of9" 
[247] "X072h_raw_CH__bf_mask_RadialDistribution_RadialCV_9of9"  "X072h_raw_CH_bra_mask_AreaShape_Area"                   
[249] "X072h_raw_CH_bra_mask_AreaShape_BoundingBoxArea"         "X072h_raw_CH_bra_mask_AreaShape_BoundingBoxMaximum_X"   
[251] "X072h_raw_CH_bra_mask_AreaShape_BoundingBoxMaximum_Y"    "X072h_raw_CH_bra_mask_AreaShape_BoundingBoxMinimum_X"   
[253] "X072h_raw_CH_bra_mask_AreaShape_BoundingBoxMinimum_Y"    "X072h_raw_CH_bra_mask_AreaShape_Center_X"               
[255] "X072h_raw_CH_bra_mask_AreaShape_Center_Y"                "X072h_raw_CH_bra_mask_AreaShape_Compactness"            
[257] "X072h_raw_CH_bra_mask_AreaShape_ConvexArea"              "X072h_raw_CH_bra_mask_AreaShape_Eccentricity"           
[259] "X072h_raw_CH_bra_mask_AreaShape_EquivalentDiameter"      "X072h_raw_CH_bra_mask_AreaShape_EulerNumber"            
[261] "X072h_raw_CH_bra_mask_AreaShape_Extent"                  "X072h_raw_CH_bra_mask_AreaShape_FormFactor"             
[263] "X072h_raw_CH_bra_mask_AreaShape_MajorAxisLength"         "X072h_raw_CH_bra_mask_AreaShape_MaxFeretDiameter"       
[265] "X072h_raw_CH_bra_mask_AreaShape_MaximumRadius"           "X072h_raw_CH_bra_mask_AreaShape_MeanRadius"             
[267] "X072h_raw_CH_bra_mask_AreaShape_MedianRadius"            "X072h_raw_CH_bra_mask_AreaShape_MinFeretDiameter"       
[269] "X072h_raw_CH_bra_mask_AreaShape_MinorAxisLength"         "X072h_raw_CH_bra_mask_AreaShape_Orientation"            
[271] "X072h_raw_CH_bra_mask_AreaShape_Perimeter"               "X072h_raw_CH_bra_mask_AreaShape_Solidity"               
[273] "X072h_raw_CH_bra_mask_Intensity_IntegratedIntensity"     "X072h_raw_CH_bra_mask_Intensity_IntegratedIntensityEdge"
[275] "X072h_raw_CH_bra_mask_Intensity_LowerQuartileIntensity"  "X072h_raw_CH_bra_mask_Intensity_MADIntensity"           
[277] "X072h_raw_CH_bra_mask_Intensity_MassDisplacement"        "X072h_raw_CH_bra_mask_Intensity_MaxIntensity"           
[279] "X072h_raw_CH_bra_mask_Intensity_MaxIntensityEdge"        "X072h_raw_CH_bra_mask_Intensity_MeanIntensity"          
[281] "X072h_raw_CH_bra_mask_Intensity_MeanIntensityEdge"       "X072h_raw_CH_bra_mask_Intensity_MedianIntensity"        
[283] "X072h_raw_CH_bra_mask_Intensity_MinIntensity"            "X072h_raw_CH_bra_mask_Intensity_MinIntensityEdge"       
[285] "X072h_raw_CH_bra_mask_Intensity_StdIntensity"            "X072h_raw_CH_bra_mask_Intensity_StdIntensityEdge"       
[287] "X072h_raw_CH_bra_mask_Intensity_UpperQuartileIntensity"  "X072h_raw_CH_bra_mask_Location_CenterMassIntensity_X"   
[289] "X072h_raw_CH_bra_mask_Location_CenterMassIntensity_Y"    "X072h_raw_CH_bra_mask_Location_CenterMassIntensity_Z"   
[291] "X072h_raw_CH_bra_mask_Location_Center_X"                 "X072h_raw_CH_bra_mask_Location_Center_Y"                
[293] "X072h_raw_CH_bra_mask_Location_Center_Z"                 "X072h_raw_CH_bra_mask_Location_MaxIntensity_X"          
[295] "X072h_raw_CH_bra_mask_Location_MaxIntensity_Y"           "X072h_raw_CH_bra_mask_Location_MaxIntensity_Z"          
[297] "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_1of9"   "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_2of9"  
[299] "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_3of9"   "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_4of9"  
[301] "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_5of9"   "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_6of9"  
[303] "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_7of9"   "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_8of9"  
[305] "X072h_raw_CH_bra_mask_RadialDistribution_FracAtD_9of9"   "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_1of9" 
[307] "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_2of9"  "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_3of9" 
[309] "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_4of9"  "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_5of9" 
[311] "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_6of9"  "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_7of9" 
[313] "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_8of9"  "X072h_raw_CH_bra_mask_RadialDistribution_MeanFrac_9of9" 
[315] "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_1of9"  "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_2of9" 
[317] "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_3of9"  "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_4of9" 
[319] "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_5of9"  "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_6of9" 
[321] "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_7of9"  "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_8of9" 
[323] "X072h_raw_CH_bra_mask_RadialDistribution_RadialCV_9of9"  "X072h_str_BF_AreaShape_area"                            
[325] "X072h_str_BF_AreaShape_aspect_ratio"                     "X072h_str_BF_AreaShape_eccentricity"                    
[327] "X072h_str_BF_AreaShape_equivalent_diameter"              "X072h_str_BF_AreaShape_extent"                          
[329] "X072h_str_BF_AreaShape_form_factor"                      "X072h_str_BF_AreaShape_inertia_tensor_0_0"              
[331] "X072h_str_BF_AreaShape_inertia_tensor_0_1"               "X072h_str_BF_AreaShape_inertia_tensor_1_0"              
[333] "X072h_str_BF_AreaShape_inertia_tensor_1_1"               "X072h_str_BF_AreaShape_inertia_tensor_eigvals_0"        
[335] "X072h_str_BF_AreaShape_inertia_tensor_eigvals_1"         "X072h_str_BF_AreaShape_locoefa_PC_1"                    
[337] "X072h_str_BF_AreaShape_locoefa_PC_2"                     "X072h_str_BF_AreaShape_locoefa_PC_3"                    
[339] "X072h_str_BF_AreaShape_locoefa_PC_4"                     "X072h_str_BF_AreaShape_locoefa_PC_5"                    
[341] "X072h_str_BF_AreaShape_locoefa_UMAP_1"                   "X072h_str_BF_AreaShape_locoefa_UMAP_2"                  
[343] "X072h_str_BF_AreaShape_locoefa_UMAP_3"                   "X072h_str_BF_AreaShape_locoefa_coeff_0"                 
[345] "X072h_str_BF_AreaShape_locoefa_coeff_1"                  "X072h_str_BF_AreaShape_locoefa_coeff_10"                
[347] "X072h_str_BF_AreaShape_locoefa_coeff_11"                 "X072h_str_BF_AreaShape_locoefa_coeff_12"                
[349] "X072h_str_BF_AreaShape_locoefa_coeff_13"                 "X072h_str_BF_AreaShape_locoefa_coeff_14"                
[351] "X072h_str_BF_AreaShape_locoefa_coeff_15"                 "X072h_str_BF_AreaShape_locoefa_coeff_16"                
[353] "X072h_str_BF_AreaShape_locoefa_coeff_17"                 "X072h_str_BF_AreaShape_locoefa_coeff_18"                
[355] "X072h_str_BF_AreaShape_locoefa_coeff_19"                 "X072h_str_BF_AreaShape_locoefa_coeff_2"                 
[357] "X072h_str_BF_AreaShape_locoefa_coeff_20"                 "X072h_str_BF_AreaShape_locoefa_coeff_21"                
[359] "X072h_str_BF_AreaShape_locoefa_coeff_22"                 "X072h_str_BF_AreaShape_locoefa_coeff_23"                
[361] "X072h_str_BF_AreaShape_locoefa_coeff_24"                 "X072h_str_BF_AreaShape_locoefa_coeff_25"                
[363] "X072h_str_BF_AreaShape_locoefa_coeff_26"                 "X072h_str_BF_AreaShape_locoefa_coeff_27"                
[365] "X072h_str_BF_AreaShape_locoefa_coeff_28"                 "X072h_str_BF_AreaShape_locoefa_coeff_29"                
[367] "X072h_str_BF_AreaShape_locoefa_coeff_3"                  "X072h_str_BF_AreaShape_locoefa_coeff_30"                
[369] "X072h_str_BF_AreaShape_locoefa_coeff_31"                 "X072h_str_BF_AreaShape_locoefa_coeff_32"                
[371] "X072h_str_BF_AreaShape_locoefa_coeff_33"                 "X072h_str_BF_AreaShape_locoefa_coeff_34"                
[373] "X072h_str_BF_AreaShape_locoefa_coeff_35"                 "X072h_str_BF_AreaShape_locoefa_coeff_36"                
[375] "X072h_str_BF_AreaShape_locoefa_coeff_37"                 "X072h_str_BF_AreaShape_locoefa_coeff_38"                
[377] "X072h_str_BF_AreaShape_locoefa_coeff_39"                 "X072h_str_BF_AreaShape_locoefa_coeff_4"                 
[379] "X072h_str_BF_AreaShape_locoefa_coeff_40"                 "X072h_str_BF_AreaShape_locoefa_coeff_41"                
[381] "X072h_str_BF_AreaShape_locoefa_coeff_42"                 "X072h_str_BF_AreaShape_locoefa_coeff_43"                
[383] "X072h_str_BF_AreaShape_locoefa_coeff_44"                 "X072h_str_BF_AreaShape_locoefa_coeff_45"                
[385] "X072h_str_BF_AreaShape_locoefa_coeff_46"                 "X072h_str_BF_AreaShape_locoefa_coeff_47"                
[387] "X072h_str_BF_AreaShape_locoefa_coeff_48"                 "X072h_str_BF_AreaShape_locoefa_coeff_49"                
[389] "X072h_str_BF_AreaShape_locoefa_coeff_5"                  "X072h_str_BF_AreaShape_locoefa_coeff_50"                
[391] "X072h_str_BF_AreaShape_locoefa_coeff_51"                 "X072h_str_BF_AreaShape_locoefa_coeff_6"                 
[393] "X072h_str_BF_AreaShape_locoefa_coeff_7"                  "X072h_str_BF_AreaShape_locoefa_coeff_8"                 
[395] "X072h_str_BF_AreaShape_locoefa_coeff_9"                  "X072h_str_BF_AreaShape_major_axis_length"               
[397] "X072h_str_BF_AreaShape_minor_axis_length"                "X072h_str_BF_AreaShape_moments_hu_0"                    
[399] "X072h_str_BF_AreaShape_moments_hu_1"                     "X072h_str_BF_AreaShape_moments_hu_2"                    
[401] "X072h_str_BF_AreaShape_moments_hu_3"                     "X072h_str_BF_AreaShape_moments_hu_4"                    
[403] "X072h_str_BF_AreaShape_moments_hu_5"                     "X072h_str_BF_AreaShape_moments_hu_6"                    
[405] "X072h_str_BF_AreaShape_orientation"                      "X072h_str_BF_AreaShape_perimeter"                       
[407] "X072h_str_CH_AreaShape_Bra_MajorAxis_Polarisation"       "X072h_str_CH_AreaShape_Bra_MinorAxis_Polarisation"      
[409] "X096h_raw_BF_AreaShape_area"                             "X096h_raw_BF_AreaShape_aspect_ratio"                    
[411] "X096h_raw_BF_AreaShape_axis_major_length"                "X096h_raw_BF_AreaShape_axis_minor_length"               
[413] "X096h_raw_BF_AreaShape_eccentricity"                     "X096h_raw_BF_AreaShape_feret_diameter_max"              
[415] "X096h_raw_BF_AreaShape_perimeter"                        "X096h_raw_BF_AreaShape_solidity"                        
[417] "X096h_raw_CH_AreaShape_Bra_AreaFraction"                 "X096h_raw_CH__bf_mask_Intensity_IntegratedIntensity"    
[419] "X096h_raw_CH__bf_mask_Intensity_IntegratedIntensityEdge" "X096h_raw_CH__bf_mask_Intensity_LowerQuartileIntensity" 
[421] "X096h_raw_CH__bf_mask_Intensity_MADIntensity"            "X096h_raw_CH__bf_mask_Intensity_MassDisplacement"       
[423] "X096h_raw_CH__bf_mask_Intensity_MaxIntensity"            "X096h_raw_CH__bf_mask_Intensity_MaxIntensityEdge"       
[425] "X096h_raw_CH__bf_mask_Intensity_MeanIntensity"           "X096h_raw_CH__bf_mask_Intensity_MeanIntensityEdge"      
[427] "X096h_raw_CH__bf_mask_Intensity_MedianIntensity"         "X096h_raw_CH__bf_mask_Intensity_MinIntensity"           
[429] "X096h_raw_CH__bf_mask_Intensity_MinIntensityEdge"        "X096h_raw_CH__bf_mask_Intensity_StdIntensity"           
[431] "X096h_raw_CH__bf_mask_Intensity_StdIntensityEdge"        "X096h_raw_CH__bf_mask_Intensity_UpperQuartileIntensity" 
[433] "X096h_raw_CH__bf_mask_Location_CenterMassIntensity_X"    "X096h_raw_CH__bf_mask_Location_CenterMassIntensity_Y"   
[435] "X096h_raw_CH__bf_mask_Location_CenterMassIntensity_Z"    "X096h_raw_CH__bf_mask_Location_Center_X"                
[437] "X096h_raw_CH__bf_mask_Location_Center_Y"                 "X096h_raw_CH__bf_mask_Location_Center_Z"                
[439] "X096h_raw_CH__bf_mask_Location_MaxIntensity_X"           "X096h_raw_CH__bf_mask_Location_MaxIntensity_Y"          
[441] "X096h_raw_CH__bf_mask_Location_MaxIntensity_Z"           "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_1of9"  
[443] "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_2of9"   "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_3of9"  
[445] "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_4of9"   "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_5of9"  
[447] "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_6of9"   "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_7of9"  
[449] "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_8of9"   "X096h_raw_CH__bf_mask_RadialDistribution_FracAtD_9of9"  
[451] "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_1of9"  "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_2of9" 
[453] "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_3of9"  "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_4of9" 
[455] "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_5of9"  "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_6of9" 
[457] "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_7of9"  "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_8of9" 
[459] "X096h_raw_CH__bf_mask_RadialDistribution_MeanFrac_9of9"  "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_1of9" 
[461] "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_2of9"  "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_3of9" 
[463] "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_4of9"  "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_5of9" 
[465] "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_6of9"  "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_7of9" 
[467] "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_8of9"  "X096h_raw_CH__bf_mask_RadialDistribution_RadialCV_9of9" 
[469] "X096h_raw_CH_bra_mask_AreaShape_Area"                    "X096h_raw_CH_bra_mask_AreaShape_BoundingBoxArea"        
[471] "X096h_raw_CH_bra_mask_AreaShape_BoundingBoxMaximum_X"    "X096h_raw_CH_bra_mask_AreaShape_BoundingBoxMaximum_Y"   
[473] "X096h_raw_CH_bra_mask_AreaShape_BoundingBoxMinimum_X"    "X096h_raw_CH_bra_mask_AreaShape_BoundingBoxMinimum_Y"   
[475] "X096h_raw_CH_bra_mask_AreaShape_Center_X"                "X096h_raw_CH_bra_mask_AreaShape_Center_Y"               
[477] "X096h_raw_CH_bra_mask_AreaShape_Compactness"             "X096h_raw_CH_bra_mask_AreaShape_ConvexArea"             
[479] "X096h_raw_CH_bra_mask_AreaShape_Eccentricity"            "X096h_raw_CH_bra_mask_AreaShape_EquivalentDiameter"     
[481] "X096h_raw_CH_bra_mask_AreaShape_EulerNumber"             "X096h_raw_CH_bra_mask_AreaShape_Extent"                 
[483] "X096h_raw_CH_bra_mask_AreaShape_FormFactor"              "X096h_raw_CH_bra_mask_AreaShape_MajorAxisLength"        
[485] "X096h_raw_CH_bra_mask_AreaShape_MaxFeretDiameter"        "X096h_raw_CH_bra_mask_AreaShape_MaximumRadius"          
[487] "X096h_raw_CH_bra_mask_AreaShape_MeanRadius"              "X096h_raw_CH_bra_mask_AreaShape_MedianRadius"           
[489] "X096h_raw_CH_bra_mask_AreaShape_MinFeretDiameter"        "X096h_raw_CH_bra_mask_AreaShape_MinorAxisLength"        
[491] "X096h_raw_CH_bra_mask_AreaShape_Orientation"             "X096h_raw_CH_bra_mask_AreaShape_Perimeter"              
[493] "X096h_raw_CH_bra_mask_AreaShape_Solidity"                "X096h_raw_CH_bra_mask_Intensity_IntegratedIntensity"    
[495] "X096h_raw_CH_bra_mask_Intensity_IntegratedIntensityEdge" "X096h_raw_CH_bra_mask_Intensity_LowerQuartileIntensity" 
[497] "X096h_raw_CH_bra_mask_Intensity_MADIntensity"            "X096h_raw_CH_bra_mask_Intensity_MassDisplacement"       
[499] "X096h_raw_CH_bra_mask_Intensity_MaxIntensity"            "X096h_raw_CH_bra_mask_Intensity_MaxIntensityEdge"       
[501] "X096h_raw_CH_bra_mask_Intensity_MeanIntensity"           "X096h_raw_CH_bra_mask_Intensity_MeanIntensityEdge"      
[503] "X096h_raw_CH_bra_mask_Intensity_MedianIntensity"         "X096h_raw_CH_bra_mask_Intensity_MinIntensity"           
[505] "X096h_raw_CH_bra_mask_Intensity_MinIntensityEdge"        "X096h_raw_CH_bra_mask_Intensity_StdIntensity"           
[507] "X096h_raw_CH_bra_mask_Intensity_StdIntensityEdge"        "X096h_raw_CH_bra_mask_Intensity_UpperQuartileIntensity" 
[509] "X096h_raw_CH_bra_mask_Location_CenterMassIntensity_X"    "X096h_raw_CH_bra_mask_Location_CenterMassIntensity_Y"   
[511] "X096h_raw_CH_bra_mask_Location_CenterMassIntensity_Z"    "X096h_raw_CH_bra_mask_Location_Center_X"                
[513] "X096h_raw_CH_bra_mask_Location_Center_Y"                 "X096h_raw_CH_bra_mask_Location_Center_Z"                
[515] "X096h_raw_CH_bra_mask_Location_MaxIntensity_X"           "X096h_raw_CH_bra_mask_Location_MaxIntensity_Y"          
[517] "X096h_raw_CH_bra_mask_Location_MaxIntensity_Z"           "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_1of9"  
[519] "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_2of9"   "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_3of9"  
[521] "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_4of9"   "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_5of9"  
[523] "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_6of9"   "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_7of9"  
[525] "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_8of9"   "X096h_raw_CH_bra_mask_RadialDistribution_FracAtD_9of9"  
[527] "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_1of9"  "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_2of9" 
[529] "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_3of9"  "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_4of9" 
[531] "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_5of9"  "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_6of9" 
[533] "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_7of9"  "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_8of9" 
[535] "X096h_raw_CH_bra_mask_RadialDistribution_MeanFrac_9of9"  "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_1of9" 
[537] "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_2of9"  "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_3of9" 
[539] "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_4of9"  "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_5of9" 
[541] "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_6of9"  "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_7of9" 
[543] "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_8of9"  "X096h_raw_CH_bra_mask_RadialDistribution_RadialCV_9of9" 
[545] "X096h_str_BF_AreaShape_area"                             "X096h_str_BF_AreaShape_aspect_ratio"                    
[547] "X096h_str_BF_AreaShape_eccentricity"                     "X096h_str_BF_AreaShape_equivalent_diameter"             
[549] "X096h_str_BF_AreaShape_extent"                           "X096h_str_BF_AreaShape_form_factor"                     
[551] "X096h_str_BF_AreaShape_inertia_tensor_0_0"               "X096h_str_BF_AreaShape_inertia_tensor_0_1"              
[553] "X096h_str_BF_AreaShape_inertia_tensor_1_0"               "X096h_str_BF_AreaShape_inertia_tensor_1_1"              
[555] "X096h_str_BF_AreaShape_inertia_tensor_eigvals_0"         "X096h_str_BF_AreaShape_inertia_tensor_eigvals_1"        
[557] "X096h_str_BF_AreaShape_locoefa_PC_1"                     "X096h_str_BF_AreaShape_locoefa_PC_2"                    
[559] "X096h_str_BF_AreaShape_locoefa_PC_3"                     "X096h_str_BF_AreaShape_locoefa_PC_4"                    
[561] "X096h_str_BF_AreaShape_locoefa_PC_5"                     "X096h_str_BF_AreaShape_locoefa_UMAP_1"                  
[563] "X096h_str_BF_AreaShape_locoefa_UMAP_2"                   "X096h_str_BF_AreaShape_locoefa_UMAP_3"                  
[565] "X096h_str_BF_AreaShape_locoefa_coeff_0"                  "X096h_str_BF_AreaShape_locoefa_coeff_1"                 
[567] "X096h_str_BF_AreaShape_locoefa_coeff_10"                 "X096h_str_BF_AreaShape_locoefa_coeff_11"                
[569] "X096h_str_BF_AreaShape_locoefa_coeff_12"                 "X096h_str_BF_AreaShape_locoefa_coeff_13"                
[571] "X096h_str_BF_AreaShape_locoefa_coeff_14"                 "X096h_str_BF_AreaShape_locoefa_coeff_15"                
[573] "X096h_str_BF_AreaShape_locoefa_coeff_16"                 "X096h_str_BF_AreaShape_locoefa_coeff_17"                
[575] "X096h_str_BF_AreaShape_locoefa_coeff_18"                 "X096h_str_BF_AreaShape_locoefa_coeff_19"                
[577] "X096h_str_BF_AreaShape_locoefa_coeff_2"                  "X096h_str_BF_AreaShape_locoefa_coeff_20"                
[579] "X096h_str_BF_AreaShape_locoefa_coeff_21"                 "X096h_str_BF_AreaShape_locoefa_coeff_22"                
[581] "X096h_str_BF_AreaShape_locoefa_coeff_23"                 "X096h_str_BF_AreaShape_locoefa_coeff_24"                
[583] "X096h_str_BF_AreaShape_locoefa_coeff_25"                 "X096h_str_BF_AreaShape_locoefa_coeff_26"                
[585] "X096h_str_BF_AreaShape_locoefa_coeff_27"                 "X096h_str_BF_AreaShape_locoefa_coeff_28"                
[587] "X096h_str_BF_AreaShape_locoefa_coeff_29"                 "X096h_str_BF_AreaShape_locoefa_coeff_3"                 
[589] "X096h_str_BF_AreaShape_locoefa_coeff_30"                 "X096h_str_BF_AreaShape_locoefa_coeff_31"                
[591] "X096h_str_BF_AreaShape_locoefa_coeff_32"                 "X096h_str_BF_AreaShape_locoefa_coeff_33"                
[593] "X096h_str_BF_AreaShape_locoefa_coeff_34"                 "X096h_str_BF_AreaShape_locoefa_coeff_35"                
[595] "X096h_str_BF_AreaShape_locoefa_coeff_36"                 "X096h_str_BF_AreaShape_locoefa_coeff_37"                
[597] "X096h_str_BF_AreaShape_locoefa_coeff_38"                 "X096h_str_BF_AreaShape_locoefa_coeff_39"                
[599] "X096h_str_BF_AreaShape_locoefa_coeff_4"                  "X096h_str_BF_AreaShape_locoefa_coeff_40"                
[601] "X096h_str_BF_AreaShape_locoefa_coeff_41"                 "X096h_str_BF_AreaShape_locoefa_coeff_42"                
[603] "X096h_str_BF_AreaShape_locoefa_coeff_43"                 "X096h_str_BF_AreaShape_locoefa_coeff_44"                
[605] "X096h_str_BF_AreaShape_locoefa_coeff_45"                 "X096h_str_BF_AreaShape_locoefa_coeff_46"                
[607] "X096h_str_BF_AreaShape_locoefa_coeff_47"                 "X096h_str_BF_AreaShape_locoefa_coeff_48"                
[609] "X096h_str_BF_AreaShape_locoefa_coeff_49"                 "X096h_str_BF_AreaShape_locoefa_coeff_5"                 
[611] "X096h_str_BF_AreaShape_locoefa_coeff_50"                 "X096h_str_BF_AreaShape_locoefa_coeff_51"                
[613] "X096h_str_BF_AreaShape_locoefa_coeff_6"                  "X096h_str_BF_AreaShape_locoefa_coeff_7"                 
[615] "X096h_str_BF_AreaShape_locoefa_coeff_8"                  "X096h_str_BF_AreaShape_locoefa_coeff_9"                 
[617] "X096h_str_BF_AreaShape_major_axis_length"                "X096h_str_BF_AreaShape_minor_axis_length"               
[619] "X096h_str_BF_AreaShape_moments_hu_0"                     "X096h_str_BF_AreaShape_moments_hu_1"                    
[621] "X096h_str_BF_AreaShape_moments_hu_2"                     "X096h_str_BF_AreaShape_moments_hu_3"                    
[623] "X096h_str_BF_AreaShape_moments_hu_4"                     "X096h_str_BF_AreaShape_moments_hu_5"                    
[625] "X096h_str_BF_AreaShape_moments_hu_6"                     "X096h_str_BF_AreaShape_orientation"                     
[627] "X096h_str_BF_AreaShape_perimeter"                        "X096h_str_CH_AreaShape_Bra_MajorAxis_Polarisation"      
[629] "X096h_str_CH_AreaShape_Bra_MinorAxis_Polarisation"      

Now we can save this monstrosity to disc:

saveRDS(Gastruloid_48h_merged_afterQC, file = "df48v3_updated_morphodata.rds")
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